Basic4Cseq (version 1.8.0)

exportVisualizationFragmentData: Export near-cis fragment data of a Data4Cseq object

Description

This function is a simple helper function that writes the near-cis data of a Data4Cseq object as tab-separated file to hard disk.

Usage

exportVisualizationFragmentData(expData, fileName, fullData = FALSE)

Arguments

expData

Experiment data of class Data4Cseq information on the 4C-seq experiment, including visualization data

fileName

Name for the tab-separated file

fullData

If TRUE, the function exports the full fragment data (including fragment end length etc). If FALSE, only the minimum fragment information is exported, i.e. chromosome, start, end and (normalized) read count.

Value

Data4Cseq object

Examples

  if(interactive()) {
    data(liverData)
    exportVisualizationFragmentData(liverData, "fetalLiverData.csv")
  }