giveEnzymeSequence

giveEnzymeSequence,character,character-method

File name of the prepared enzyme database

fileNameDatabase

Name of the enzyme for which the sequence is to be returned

enzymeName


This function is a small convenience function that reads in a prepared file with restriction enzyme sequence names and sequences. <code>giveEnzymeSequence</code> then provides restriction enzyme sequences for the example enzymes listed in van de Werken et al's 4Cseqpipe data base. 


Basic4Cseq is an R/Bioconductor package for basic
filtering, analysis and subsequent visualization of 4C-seq
data. Virtual fragment libraries can be created for any
BSGenome package, and filter functions for both reads and
fragments and basic quality controls are included. Fragment
data in the vicinity of the experiment's viewpoint can be
visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.

Carolin Walter

Basic4Cseq

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

giveEnzymeSequence function

This function is a small convenience function that reads in a prepared file with restriction enzyme sequence names and sequences. <code>giveEnzymeSequence</code> then provides restriction enzyme sequences for the example enzymes listed in van de Werken et al's 4Cseqpipe data base.

giveEnzymeSequence: Provide the corresponding enzyme sequence for an enzyme name

Description

Usage

Arguments

Value

References

Examples