importVisualizationFragmentData

importVisualizationFragmentData,character-method

Name for the tab-separated file with near-cis fragment data

fileName


This function is a simple helper function that can import near-cis data which was previously exported and stored as tab-separated file.


Basic4Cseq is an R/Bioconductor package for basic
filtering, analysis and subsequent visualization of 4C-seq
data. Virtual fragment libraries can be created for any
BSGenome package, and filter functions for both reads and
fragments and basic quality controls are included. Fragment
data in the vicinity of the experiment's viewpoint can be
visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.

Carolin Walter

Basic4Cseq

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

importVisualizationFragmentData function

This function is a simple helper function that can import near-cis data which was previously exported and stored as tab-separated file.

importVisualizationFragmentData: Import visualization data from a file

Description

Usage

Arguments

Value

Examples