liverDataRaw


  This data set contains an instance of a <code>Data4Cseq</code> object; 2185 reads on 453 fragments are included. Raw reads are mapped to fragments, but the read count has not yet been normalized.
  
  The 4C-seq data was taken from Stadhouders et al's fetal liver data set.


datasets

Basic4Cseq is an R/Bioconductor package for basic
filtering, analysis and subsequent visualization of 4C-seq
data. Virtual fragment libraries can be created for any
BSGenome package, and filter functions for both reads and
fragments and basic quality controls are included. Fragment
data in the vicinity of the experiment's viewpoint can be
visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.

Carolin Walter

Basic4Cseq

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

liverDataRaw function

Format

Shortened version of Stadhouders et al's fetal liver data: Stadhouders, R., Thongjuea, S., et al. (2012): Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. EMBO, 31, 986-999.

Source

This data set contains an instance of a <code>Data4Cseq</code> object; 2185 reads on 453 fragments are included. Raw reads are mapped to fragments, but the read count has not yet been normalized.
  
  The 4C-seq data was taken from Stadhouders et al's fetal liver data set.

liverDataRaw: Example 4C-seq data set of fetal liver data

Description

Usage

Arguments

Format

Source

Examples