applyJobFunction
ONLY FOR INTERNAL USAGE.
The BatchJobs package
Combination of makeRegistry, batchMap and submitJobs.
Add packages to registry.
Maps a function over the results of a registry by using batchMap.
Export R object to be available on the slaves.
Manually query the BatchJobs database
Maps a function over lists or vectors, adding jobs to a registry.
Reduces via a binary function over a list adding jobs to a registry.
Check job ids.
Add source dirs to registry.
Unload exported R objects.
Add source files to registry.
cfHandleUnknownSubmitError
Cluster functions helper: Handle an unknown error during job submission.
Map function over all combinations.
Call an arbitrary function on specified SSH workers.
Cluster functions helper: Kill a batch job via OS command
BatchJobs configuration.
Reduces results via a binary function and adds jobs for this to a registry.
ONLY FOR INTERNAL USAGE.
Cluster functions helper: Brew your template into a job description file.
Find jobs depending on computional state.
Cluster functions helper: Read in your brew template file.
Returns a list of BatchJobs configuration settings
ONLY FOR INTERNAL USAGE.
Get the physical location of job files on the hard disk.
ONLY FOR INTERNAL USAGE.
Get number of jobs in registry.
Get jobs from registry by id.
Loads a specific result file.
Helper function to debug multicore mode.
Loads result files for id vector.
Helper function to debug SSH mode.
Create an SSH cluster to execute jobs.
makeClusterFunctionsTorque
Create cluster functions for torque-based systems.
Get ids of jobs in registry.
Get log file paths for jobs.
Get computational information of jobs.
Grep log files for a pattern.
installPackagesOnSSHWorkers
Install packages on SSH workers.
Create a ClusterFuntions object.
Kill some jobs on the batch system.
makeClusterFunctionsSLURM
Create cluster functions for SLURM-based systems.
Load a specific configuration file.
Remove packages from registry.
Remove packages from registry.
Create cluster functions for Sun Grid Engine systems.
Reduce results from result directory.
Source registry files
Remove a registry object.
Submit jobs or chunks of jobs to batch system via cluster function.
Sanitize a path
Get error messages of jobs.
Wait for termination of jobs on the batch system.
Get job from registry by id.
Find all results where a specific condition is true.
Load exported R data objects.
Load a previously saved registry.
Finds ids of jobs that match a query.
Set and overwrite configuration settings
Retrieve Job Parameters.
makeClusterFunctionsInteractive
Create cluster functions for sequential execution in same session.
Create SSH worker for SSH cluster functions.
Function to get the resources that were submitted for some jobs.
Create a SubmitJobResult object.
Function to get job resources in job function.
Set packages for a registry.
Print and return R installation and other information for SSH workers.
Show information about available computational resources on cluster.
makeClusterFunctionsMulticore
Use multiple cores on local Linux machine to spawn parallel jobs.
Create cluster functions for LSF systems.
makeClusterFunctionsLocal
Create cluster functions for sequential execution on local host.
Sweep obsolete files from the file system.
Creates a job description.
Syncronize staged queries into the registry.
Construct a registry object.
Display the contents of a log file.
makeClusterFunctionsOpenLava
Create cluster functions for OpenLava systems.
Retrieve or show status information about jobs.
removeRegistrySourceFiles
Remove source files from registry.
Tests a job by running it with Rscript in a new process.
Reset computational state of jobs.
ONLY FOR INTERNAL USAGE.
Sets the job function for already existing jobs.
Set job names.