BatchQC (version 1.0.17)

batchQC_shapeVariation: Perform Mean and Variance batch variation analysis

Description

Perform Mean and Variance batch variation analysis

Usage

batchQC_shapeVariation(data, groups, plot = FALSE, groupCol = NULL)

Arguments

data

Given data

groups

a character vector indicating sample group membership

plot

Indicate whether to generate plot

groupCol

group color

Value

Mean and Variance batch variation Overall and Pairwise p-values

Examples

nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
    npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, 
    basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
batchQC_shapeVariation(data.matrix, groups=batch)