BatchQC (version 1.0.17)

rnaseq_sim: Generate simulated count data with batch effects for ngenes

Description

Generate simulated count data with batch effects for ngenes

Usage

rnaseq_sim(ngenes = 50, nbatch = 3, ncond = 2, npercond = 10, basemean = 10000, ggstep = 50, bbstep = 2000, ccstep = 800, basedisp = 100, bdispstep = 10, swvar = 1000, seed = 1000)

Arguments

ngenes

Number of genes to simulate

nbatch

Number of batches to simulate

ncond

Number of conditions to simulate

npercond

Number of samples per condition per batch to simulate

basemean

Base mean

ggstep

Gene to Gene step variation

bbstep

Batch to Batch step variation

ccstep

Condition to Condition step variation

basedisp

Base Dispersion

bdispstep

Batch to Batch Dispersion step variation

swvar

Sample-wise extra variation

seed

Random seed for reproducibility

Value

RNA Seq count data matrix

Examples

rnaseq_sim()
rnaseq_sim(ngenes=100, nbatch=5, seed=1234)
rnaseq_sim(ngenes=100, nbatch=3, ncond=2, npercond=10, basemean=10000,
    ggstep=50, bbstep=20000, ccstep=8000, basedisp=100, bdispstep=10, 
    swvar=1000, seed=1234)