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BayClone2 (version 1.1)

Bayesian Feature Allocation Model for Tumor Heterogeneity

Description

A Bayesian feature allocation model is implemented for inference on tumor heterogeneity using next-generation sequencing data. The model identifies the subclonal copy number and single nucleotide mutations at a selected set of loci and provides inference on genetic tumor variation.

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Version

Install

install.packages('BayClone2')

Monthly Downloads

5

Version

1.1

License

GPL-3 | file LICENSE

Maintainer

Subhajit Sengupta

Last Published

December 24th, 2014

Functions in BayClone2 (1.1)

fn_post_C

fn_post_C function
export_N_n

export_N_n function
BayClone2

BayClone2 function
BayClone2_Simulation1_mut

Number of mutated reads (n) for simulation 1 in Lee et al (2014)
fn_posterior_point

fn_posterior_point function
BayClone2_Simulation1_tot

Total number of reads (N) for simulation 1 in Lee et al (2014)