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BaySIC (version 1.0)
Bayesian Analysis of Significantly Mutated Genes in Cancer
Description
This R package is the software implementation of the algorithm BaySIC, a Bayesian approach toward analysis of significantly mutated genes in cancer data.
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Link to current version
Version
Version
1.0
Install
install.packages('BaySIC')
Monthly Downloads
11
Version
1.0
License
GPL (>= 2)
Maintainer
Nicholas B Larson
Last Published
April 3rd, 2013
Functions in BaySIC (1.0)
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BaySIC-package
Bayesian Analysis of Significantly Mutated Genes in Cancer
baysic.fit
Fits BaySIC BMR model
revcomp
DNA Reverse Complementation
baysic.test
BaySIC Evaluation of SMGs
fuzzy.FDR.approx
Generate Approximate Fuzzy Rejection Probabilites
example.dat
Example Mutation Data (Build hg19)
ccds.18
CCDS Reference Data (Build hg18)
baysic.data
Organizes data for BaySIC functions
ccds.19
CCDS Reference Data (Build hg19)
BMR.plot
Visualize Sequence Context BMRs
write.baysic
Write BaySIC JAGS model files
fn.cat
Collapses SNV and reference data into sequence mutation categories