plot.bMap_eng.cifti

Implements Bayesian brain mapping with population-derived priors,
including the original model described in Mejia et al. (2020)
<doi:10.1080/01621459.2019.1679638>, the model with spatial priors described
in Mejia et al. (2022) <doi:10.1080/10618600.2022.2104289>, and the model
with population-derived priors on functional connectivity described in Mejia
et al. (2025) <doi:10.1093/biostatistics/kxaf022>. Population-derived priors
are based on templates representing established brain network maps, for
example derived from independent component analysis (ICA), parcellations,
or other methods.  Model estimation is based on expectation-maximization or
variational Bayes algorithms. Includes direct support for 'CIFTI', 'GIFTI',
and 'NIFTI' neuroimaging file formats.

Amanda Mejia

BayesBrainMap

Estimate Brain Networks and Connectivity with Population-Derived
Priors

Damon Pham

Nohelia Da Silva

plot.bMap_eng.cifti function

<dl><dt>x</dt>
<dd>The engagements from <code>id_engagements.cifti</code></dd>
<dt>stat</dt>
<dd><code>"engaged"</code> (default), <code>"pvals"</code>, <code>"pvals_adj"</code>,
<code>"tstats"</code>, <code>"vars"</code>, or <code>"thresholded"</code>.</dd>
<dt>test_level</dt>
<dd>If <code>stat</code> is not <code>"engaged"</code> or <code>thresholded</code>,
which test level should be used? See <code>dimnames(x$engaged_mat)[[3]]</code> for the test levels.
If <code>NULL</code> (default), the first test level will be used.</dd>
<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd></dl>

Arguments

Plot engagements — plot.bMap_eng.cifti

<dl>

<dt>x</dt>
<dd>The engagements from <code>id_engagements.cifti</code></dd>


<dt>stat</dt>
<dd><code>"engaged"</code> (default), <code>"pvals"</code>, <code>"pvals_adj"</code>,
<code>"tstats"</code>, <code>"vars"</code>, or <code>"thresholded"</code>.</dd>


<dt>test_level</dt>
<dd>If <code>stat</code> is not <code>"engaged"</code> or <code>thresholded</code>,
which test level should be used? See <code>dimnames(x$engaged_mat)[[3]]</code> for the test levels.
If <code>NULL</code> (default), the first test level will be used.</dd>


<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd>

</dl>

plot.bMap_eng.cifti: Plot engagements

Description

Usage

Value

Arguments