BayesSUR (version 1.1-2)

fitted.BayesSUR: fitted response values corresponds to the posterior mean estimates

Description

Return the fitted response values that correspond to the posterior mean estimates from a "BayesSUR" class object.

Usage

# S3 method for BayesSUR
fitted(object, Pmax = 0, ...)

Arguments

object

an object of class "BayesSUR"

Pmax

threshold that truncates the estimated coefficients based on thresholding the estimated latent indicator variable. Default is 0.

...

other arguments

Value

Fitted values extracted from an object of class "BayesSUR". If the BayesSUR specified data standardization, the fitted values are base based on standardized data.

Examples

# NOT RUN {
data("example_eQTL", package = "BayesSUR")
hyperpar <- list( a_w = 2 , b_w = 5 )

set.seed(9173)
fit <- BayesSUR(Y = example_eQTL[["blockList"]][[1]], 
                X = example_eQTL[["blockList"]][[2]],
                data = example_eQTL[["data"]], outFilePath = tempdir(),
                nIter = 100, burnin = 50, nChains = 2, gammaPrior = "hotspot",
                hyperpar = hyperpar, tmpFolder = "tmp/" )

## check fitted values
fitted.val <- fitted(fit)

# }

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