BayesSUR (version 2.3-0)

fitted.BayesSUR: get fitted responses

Description

Return the fitted response values that correspond to the posterior mean estimates from a BayesSUR class object.

Usage

# S3 method for BayesSUR
fitted(object, Pmax = 0, beta.type = "marginal", ...)

Value

Fitted values extracted from an object of class BayesSUR. If the BayesSUR specified data standardization, the fitted values are base based on standardized data.

Arguments

object

an object of class BayesSUR

Pmax

valid if beta.type="conditional". If beta.type="conditional" and Pmax=0.5, it gives median probability model betas. Default is 0

beta.type

type of estimated beta for the fitted model. Default is marginal, giving marginal beta estimation. If beta.type="conditional", it gives beta estimation conditional on gamma=1

...

other arguments

Examples

data("exampleEQTL", package = "BayesSUR")
hyperpar <- list(a_w = 2, b_w = 5)

set.seed(9173)
fit <- BayesSUR(
  Y = exampleEQTL[["blockList"]][[1]],
  X = exampleEQTL[["blockList"]][[2]],
  data = exampleEQTL[["data"]], outFilePath = tempdir(),
  nIter = 10, burnin = 0, nChains = 1, gammaPrior = "hotspot",
  hyperpar = hyperpar, tmpFolder = "tmp/"
)

## check fitted values
fitted.val <- fitted(fit)