plot.BGLM

S3 method: use <code>view_xifti</code> to plot a <code>"BGLM"</code> object

Performs a spatial Bayesian general linear model (GLM) for task
functional magnetic resonance imaging (fMRI) data on the cortical surface.
Additional models include group analysis and inference to detect thresholded
areas of activation. Includes direct support for the 'CIFTI' neuroimaging
file format. For more information see A. F. Mejia, Y. R. Yue, D. Bolin, F.
Lindgren, M. A. Lindquist (2020) <doi:10.1080/01621459.2019.1611582> and D.
Spencer, Y. R. Yue, D. Bolin, S. Ryan, A. F. Mejia (2022)
<doi:10.1016/j.neuroimage.2022.118908>.

Amanda Mejia

BayesfMRI

Spatial Bayesian Methods for Task Functional MRI Studies

Damon Pham

David Bolin

Yu (Ryan) Yue

Daniel Spencer

Sarah Ryan

plot.BGLM function

<dl><dt>x</dt>
<dd>An object of class "BGLM"</dd>
<dt>Bayes</dt>
<dd><code>TRUE</code> for plotting Bayesian results, <code>FALSE</code> for plotting
classical GLM results. Default: <code>NULL</code>, which will use the Bayesian results
if available and the classical results if not.</dd>
<dt>idx</dt>
<dd>Which field should be plotted? Give the numeric indices or the
names. <code>NULL</code> (default) will show all fields. This argument overrides
the <code>idx</code> argument to <code>view_xifti</code>.</dd>
<dt>title</dt>
<dd>If NULL, the field names associated with idx will be used.</dd>
<dt>session</dt>
<dd>Which session should be plotted? <code>NULL</code> (default) will
use the first.</dd>
<dt>zlim</dt>
<dd>Overrides the <code>zlim</code> argument for
<code>view_xifti</code>. Default: <code>c(-1, 1)</code>.</dd>
<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd></dl>

Arguments

S3 method: use view_xifti to plot a "BGLM" object — plot.BGLM

<dl>

<dt>x</dt>
<dd>An object of class "BGLM"</dd>


<dt>Bayes</dt>
<dd><code>TRUE</code> for plotting Bayesian results, <code>FALSE</code> for plotting
classical GLM results. Default: <code>NULL</code>, which will use the Bayesian results
if available and the classical results if not.</dd>


<dt>idx</dt>
<dd>Which field should be plotted? Give the numeric indices or the
names. <code>NULL</code> (default) will show all fields. This argument overrides
the <code>idx</code> argument to <code>view_xifti</code>.</dd>


<dt>title</dt>
<dd>If NULL, the field names associated with idx will be used.</dd>


<dt>session</dt>
<dd>Which session should be plotted? <code>NULL</code> (default) will
use the first.</dd>


<dt>zlim</dt>
<dd>Overrides the <code>zlim</code> argument for
<code>view_xifti</code>. Default: <code>c(-1, 1)</code>.</dd>


<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd>

</dl>

plot.BGLM: S3 method: use `view_xifti` to plot a `"BGLM"` object

Description

Usage

Value

Arguments