plot.BGLM2

S3 method: use <code>view_xifti</code> to plot a <code>"BGLM2"</code> object

Performs a spatial Bayesian general linear model (GLM) for task
functional magnetic resonance imaging (fMRI) data on the cortical surface.
Additional models include group analysis and inference to detect thresholded
areas of activation. Includes direct support for the 'CIFTI' neuroimaging
file format. For more information see A. F. Mejia, Y. R. Yue, D. Bolin, F.
Lindgren, M. A. Lindquist (2020) <doi:10.1080/01621459.2019.1611582> and D.
Spencer, Y. R. Yue, D. Bolin, S. Ryan, A. F. Mejia (2022)
<doi:10.1016/j.neuroimage.2022.118908>.

Amanda Mejia

BayesfMRI

Spatial Bayesian Methods for Task Functional MRI Studies

Damon Pham

David Bolin

Yu (Ryan) Yue

Daniel Spencer

Sarah Ryan

plot.BGLM2 function

<dl><dt>x</dt>
<dd>An object of class "BGLM2"</dd>
<dt>idx</dt>
<dd>Which contrast should be plotted? Give the numeric indices or the
names. <code>NULL</code> (default) will show all contrasts. This argument
overrides the <code>idx</code> argument to <code>view_xifti</code>.</dd>
<dt>stat</dt>
<dd>Estimates of the <code>"contrasts"</code> (default), or their
thresholded <code>"activations"</code>.</dd>
<dt>zlim</dt>
<dd>Overrides the <code>zlim</code> argument for
<code>view_xifti</code>. Default: <code>c(-1, 1)</code>.</dd>
<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd></dl>

Arguments

S3 method: use view_xifti to plot a "BGLM2" object — plot.BGLM2

<dl>

<dt>x</dt>
<dd>An object of class "BGLM2"</dd>


<dt>idx</dt>
<dd>Which contrast should be plotted? Give the numeric indices or the
names. <code>NULL</code> (default) will show all contrasts. This argument
overrides the <code>idx</code> argument to <code>view_xifti</code>.</dd>


<dt>stat</dt>
<dd>Estimates of the <code>"contrasts"</code> (default), or their
thresholded <code>"activations"</code>.</dd>


<dt>zlim</dt>
<dd>Overrides the <code>zlim</code> argument for
<code>view_xifti</code>. Default: <code>c(-1, 1)</code>.</dd>


<dt>...</dt>
<dd>Additional arguments to <code>view_xifti</code></dd>

</dl>

plot.BGLM2: S3 method: use `view_xifti` to plot a `"BGLM2"` object

Description

Usage

Value

Arguments