traceplot

traceplot.beeSurvFit

This is the generic <code>traceplot</code> S3 method for the <code>beeSurvFit</code>
class. It plots the traces with as well as the densities for the parameters of
the GUTS IT or GUTS SD. The traceplot includes by default the warmup iterations,
the density plot does not include them

Tools to calibrate, validate, and make predictions with the
General Unified Threshold model of Survival adapted for Bee species. The
model is presented in the publication from Baas, J., Goussen, B., Miles, M.,
Preuss, T.G., Roessing, I. (2022) <doi:10.1002/etc.5423> and
Baas, J., Goussen, B., Taenzler, V., Roeben, V., Miles, M., Preuss, T.G.,
van den Berg, S., Roessink, I. (2024) <doi:10.1002/etc.5871>, and is based on the
GUTS framework Jager, T., Albert, C., Preuss, T.G. and Ashauer, R. (2011)
<doi:10.1021/es103092a>.
The authors are grateful to Bayer A.G. for its financial support.

Romoli Carlo

BeeGUTS

General Unified Threshold Model of Survival for Bees using
Bayesian Inference

Benoit Goussen

Liubov Zakharova

Carlo Romoli

Bayer AG 

ibacon GmbH 

traceplot function

<dl><dt>object</dt>
<dd>An object of class <code>beeSurvFit</code> to be plotted</dd>
<dt>...</dt>
<dd>Additional parameters to be parsed to generic <code>rstan</code> plot functions</dd>
<dt>incWarmup_trace</dt>
<dd>A logical indicating whether the warmup iterations should be plotted
in the traceplot (default TRUE)</dd>
<dt>incWarmup_dens</dt>
<dd>A logical indicating whether the warmup iterations should be plotted
in the density plot (default FALSE)</dd></dl>

Arguments

Plotting method for traces and densities for beeSurvFit objects — traceplot

<dl>

<dt>object</dt>
<dd>An object of class <code>beeSurvFit</code> to be plotted</dd>


<dt>...</dt>
<dd>Additional parameters to be parsed to generic <code>rstan</code> plot functions</dd>


<dt>incWarmup_trace</dt>
<dd>A logical indicating whether the warmup iterations should be plotted
in the traceplot (default TRUE)</dd>


<dt>incWarmup_dens</dt>
<dd>A logical indicating whether the warmup iterations should be plotted
in the density plot (default FALSE)</dd>

</dl>

traceplot: Plotting method for traces and densities for `beeSurvFit` objects

Description

Usage

Value

Arguments

Examples