conditional_prob_pathogenic

Logical vector of case (<code>TRUE</code>) control (<code>FALSE</code>) status.

Integer matrix of variant counts per individual, one row per individual and one column per variant.

Minimum allele count per individual to be considered to have a pathogenic combination of variants. &#39;1&#39; could correspond to a dominant inheritance hypothesis whereas &#39;2&#39; could correspond to a recessive inheritance hypothesis. Can either be an integer value (then used for all samples), or integer vector of <code>length(y)</code>, useful for example when different samples have different ploidy.

min_ac

Other arguments to pass to <code><a rd-options="" href="/link/bevimed?package=BeviMed&version=3.0" data-mini-rdoc="BeviMed::bevimed">bevimed</a></code>.

Calculate probability of pathogencity for variants in region given an association between case label and the region

A fast integrative genetic association test for rare diseases.

Daniel Greene

BeviMed

Bayesian Evaluation of Variant Involvement in Mendelian
Disorders

conditional_prob_pathogenic function

Other arguments to pass to <code><a rd-options='' href='bevimed'>bevimed</a></code>.

conditional_prob_pathogenic: Calculate probability of pathogencity for variants in region given an association between case label and the region

Description

Usage

Arguments

Value