clusterSitesToGR

clusterSitesToGR,BSraw-method

clusterSitesToGR,BSrel-method

A <code>BSraw</code> or <code>BSrel</code> object with a
    <code>cluster.id</code> column in the <code>rowRanges</code> slot. Usually the
    output of <code>clusterSites</code>.

object


This function allows to get the start and end positions of CpG clusters
from a <code>BSraw</code> or <code>BSrel</code> object, when there is a <code>cluster.id</code>
column in the <code>rowRanges</code> slot.


The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.

Katja Hebestreit

BiSeq

Processing and analyzing bisulfite sequencing data

clusterSitesToGR function

This function allows to get the start and end positions of CpG clusters
from a <code>BSraw</code> or <code>BSrel</code> object, when there is a <code>cluster.id</code>
column in the <code>rowRanges</code> slot.

clusterSitesToGR: A function to obtain a `GRanges` object of CpG clusters from `BSraw` and `BSrel` objects

Description

Usage

Arguments

Value

See Also

Examples