covBoxplots

covBoxplots,BSraw-method

object


Other graphical parameters passed to the <code>boxplot</code> function.



A boxplot per sample is plotted for the coverages of CpG-sites. 
It is constrained to CpG-sites which are covered in the respective sample (coverage <code>!= 0</code> and not <code>NA</code>).


The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.

Katja Hebestreit

BiSeq

Processing and analyzing bisulfite sequencing data

covBoxplots function

Other graphical parameters passed to the <code>boxplot</code> function.

A boxplot per sample is plotted for the coverages of CpG-sites. 
It is constrained to CpG-sites which are covered in the respective sample (coverage <code>!= 0</code> and not <code>NA</code>).

covBoxplots: Creates boxplots of coverages per sample

Description

Usage

Arguments

See Also

Examples