covStatistics

covStatistics,BSraw-method

covStatistics,BSrel-method

object


This function produces information per samples about 1.) the covered CpG-sites 2.) the median of their coverages.


The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.

Katja Hebestreit

BiSeq

Processing and analyzing bisulfite sequencing data

covStatistics function

This function produces information per samples about 1.) the covered CpG-sites 2.) the median of their coverages.

covStatistics: Prints a short summary of coverage statistics per sample

Description

Usage

Arguments

Examples