estLocCor

estLocCor,list-method

vario.sm


For each location the correlation of this location's z-score to $\bar{Z}$
of its CpG cluster is estimated.


The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.

Katja Hebestreit

BiSeq

Processing and analyzing bisulfite sequencing data

estLocCor function

For each location the correlation of this location's z-score to $\bar{Z}$
of its CpG cluster is estimated.

Estimates the correlations of the z-scores

A variogram matrix, usually created by
    <code>smoothVariogram</code> beforehand.

variogram

A list of the test results per CpG cluster.

pValsList

The standard deviations of z-scores
    within each cluster.

sigma.cluster

The arithmetic means of the z-scores for each cluster.

Z.cluster

The widths (number of pase pairs) of each cluster.

estLocCor: Estimates the correlations of the z-scores

Description

Usage

Arguments

Value

References

See Also

Examples