rrbs


RRBS data of the CpG sites CpG sites from genomic regions on p arms of chromosome 1 and 2
covered in at least one sample. Data was obtained from 5 APL patient
samples and 5 control samples (APL in remission). RRBS data was
preprocessed with the Bismark software version 0.5.


datasets

The BiSeq package provides useful classes and functions to
handle and analyze targeted bisulfite sequencing (BS) data such
as reduced-representation bisulfite sequencing (RRBS) data. In
particular, it implements an algorithm to detect differentially
methylated regions (DMRs). The package takes already aligned BS
data from one or multiple samples.

Katja Hebestreit

BiSeq

Processing and analyzing bisulfite sequencing data

rrbs function

A <code><a rd-options="" href="/link/BSraw-class?package=BiSeq&version=1.12.0" data-mini-rdoc="BiSeq::BSraw-class">BSraw-class</a></code> object.

Format

Schoofs T, Rohde C, Hebestreit K, Klein HU, Goellner S, Schulze I,
  Lerdrup M, Dietrich N, Agrawal-Singh S, Witten A, Stoll M, Lengfelder
  E, Hofmann WK, Schlenke P, Buechner T, Hansen K, Berdel WE, Rosenbauer
  F, Dugas M, Mueller-Tidow C (2012). DNA methylation changes are a late
  event in acute promyelocytic leukemia and coincide with loss of
  transcription factor binding. Blood. 

Source

RRBS data of the CpG sites CpG sites from genomic regions on p arms of chromosome 1 and 2
covered in at least one sample. Data was obtained from 5 APL patient
samples and 5 control samples (APL in remission). RRBS data was
preprocessed with the Bismark software version 0.5.

rrbs: RRBS data of APL patient samples and controls.

Description

Usage

Arguments

Format

Source

References

Examples