BioInstaller (version 0.1.2)

show.installed: Show all installed bio-softwares in system

Description

Show all installed bio-softwares in system

Usage

show.installed(db = Sys.getenv("BIO_SOFTWARES_DB_ACTIVE",
  system.file("extdata", "softwares_db_demo.yaml", package = "BioInstaller")),
  only.installed = TRUE, verbose = TRUE)

Arguments

db

File of saving softwares infomation

only.installed

Logical wheather only show installed softwares in db

verbose

Ligical indicating wheather show the log message

Value

Bool Value

Examples

# NOT RUN {
db <- sprintf('%s/.BioInstaller', tempdir())
set.biosoftwares.db(db)
change.info(name = 'bwa', installed = 'yes', source.dir = '',
bin.dir = '', excutable.files = c('demo'), others.customer = 'demo')
show.installed()
unlink(db)
# }