GSE-class: Class "GSE": A class to represent gene set enrichment data
Description
GSE is a class to represent gene set enrichment data and will be used in the
modelData slot in the gseModel object. This class will store all of the
information that pertains to performing gene set enrichment.
Objects from the Class
Objects can be created by calls of the form new("GSE", ...).Slots
incidMat:- the incidence matrix that shows the relationship
between the genes and the gene sets
gTestStat:- the test statistic for the genes relationship
with the phenotype
gsTestStat:- the test statistic for the gene set
expData:- the experimental data (here it will be of class ExpressionSet)
descr:- a description of the gene set being studied
Methods
- incidMat<-
- Sets the
incidMat slot - incidMat
- Returns the
incidMat slot - gTestStat<-
- Sets the
gTestStat slot - gTestStat
- Returns the
gTestStat slot - gsTestStat<-
- Sets the
gsTestStat slot - gsTestStat
- Returns the
gsTestStat slot - expData<-
- Sets the
expData slot - expData
- Returns the
expData slot - descr<-
- Sets the
descr slot - descr
- Returns the
descr slot