compareNetworks

Network graphNEL or igraph format.

network1

Second network in graphNEL or igraph format, or subnetwork drawn from first network.

network2


Boolean value, whether to plot the cumulative degree distributions.


plot


The function compares the following parameters of two networks:
diameter, average degree, degree exponent, average path length and plots the
cumulative degree distributions. The networks have to be connected components.


This package provides functions for the integrated
analysis of protein-protein interaction networks and the
detection of functional modules. Different datasets can be
integrated into the network by assigning p-values of
statistical tests to the nodes of the network. E.g. p-values
obtained from the differential expression of the genes from an
Affymetrix array are assigned to the nodes of the network. By
fitting a beta-uniform mixture model and calculating scores
from the p-values, overall scores of network regions can be
calculated and an integer linear programming algorithm
identifies the maximum scoring subnetwork.

Marcus Dittrich

BioNet

Routines for the functional analysis of biological networks

compareNetworks function

Network graphNEL or igraph format.

Second network in graphNEL or igraph format, or subnetwork drawn from first network.

Boolean value, whether to plot the cumulative degree distributions.

The function compares the following parameters of two networks:
diameter, average degree, degree exponent, average path length and plots the
cumulative degree distributions. The networks have to be connected components.

compareNetworks: Compare parameters of two networks

Description

Usage

Arguments

Value

Examples