loadNetwork.tab

file

Booelan value whether to include header or not.

header

Booelan value whether the network is to be directed or not.

directed

Output format of the network, either <em>graphNEL</em> or <em>igraph</em>

format


The function loads a network from a tabular format.


This package provides functions for the integrated
analysis of protein-protein interaction networks and the
detection of functional modules. Different datasets can be
integrated into the network by assigning p-values of
statistical tests to the nodes of the network. E.g. p-values
obtained from the differential expression of the genes from an
Affymetrix array are assigned to the nodes of the network. By
fitting a beta-uniform mixture model and calculating scores
from the p-values, overall scores of network regions can be
calculated and an integer linear programming algorithm
identifies the maximum scoring subnetwork.

Marcus Dittrich

BioNet

Routines for the functional analysis of biological networks

loadNetwork.tab function

The function loads a network from a tabular format.

loadNetwork.tab: Load network from tabular format

Description

Usage

Arguments

See Also