Singular Value Decomposition
Determine the Contact Map and Distance Matrices
Normalization of a Matrix
Frobenius Norm of Two Matrices
Compute the Covariance Matrices and B Factors for a List of PDBs
Mutual Information
Extract Data from a PDB-File
Read Matrix Data from a File
Sort a Matrix According to a Specified Column
Output of the Amino Acid Coding Scheme
Writes Matrix Data to a File
Conversion of Amino Acids into Integer Values
Compute the Sequence Entropy for an Alignment
BioPhysConnectoR
Returns a List of Contacts for a given Contact Map
Determine B factors
Read FASTA formated Sequences
Self-Consistent Pair Contact Probability Approximation
Construct the Hessian Matrix
Compute the Covariance Matrix / Inverse Hessian Matrix
Compute the Frequencies in an Alignment
Apply a List of Different Amino Acid Sequences
Computed Elastic Network Models for Switched-Off-List of Contacts
List the Functions of the BioPhysConnectoR Package
Compute the Interaction Matrix