Index: aa2num Conversion of Amino Acids into Integer Values BioPhysConnectoR-package BioPhysConnectoR build.contacts Determine the Contact Map and Distance Matrices build.hess Construct the Hessian Matrix build.interact Compute the Interaction Matrix build.invhess Compute the Covariance Matrix / Inverse Hessian Matrix extractPDB Extract Data from a PDB-File fnorm Frobenius Norm of Two Matrices get.bfacs Determine B factors get.contact.list Returns a List of Contacts for a given Contact Map get.cov Compute the Covariance Matrix / Inverse Hessian Matrix get.entropy Compute the Sequence Entropy for an Alignment get.freqs Compute the Frequencies in an Alignment get.mie Mutual Information get.svd Singular Value Decomposition lbpc List the Functions of the BioPhysConnectoR Package mat.norm Normalisation of a Matrix mat.read Read Matrix Data from a File mat.sort Sort a Matrix According to a Specified Column mat.write Writes Matrix Data to a File read.fasta Reads aligned or un-aligned sequences from a FASTA format file scpcp Self-Consistent Pair Contact Probability Approximation show.code Output of the Amino Acid Coding Scheme sim Compute the Correlation Matrix and B Factors for a List of PDBs simc Computed Elastic Network Models for Switched-Off-List of Contacts sims Apply a List of Different Amino Acid Sequences