BioVizSeq (version 1.0.3)

cdd_plot: cdd_plot

Description

Visualization of domain in CDD file

Usage

cdd_plot(
  cdd_file,
  fasta_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Value

p

Arguments

cdd_file

The path of cdd file.

fasta_file

The path of fasta file.

the_order

The path of order file. A List of Gene ID , One ID Per Line.

domain_select

The domain ID which you want to align with.

shape

RoundRect or Rect.

r

The radius of rounded corners.

legend_size

The size of legend.

domain_color

The color set of domain.

Author

Shiqi Zhao

Examples

hitdata_path <- system.file("extdata", "hitdata.txt", package = "BioVizSeq")
fa_path <- system.file("extdata", "idpep.fa", package = "BioVizSeq")
cdd_plot(hitdata_path, fa_path)

order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
cdd_plot(hitdata_path, fa_path, the_order = order_path)