BioVizSeq (version 1.0.3)

pfam_plot: pfam_plot

Description

Visualization of domain in pfam result file

Usage

pfam_plot(
  pfam_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Value

p

Arguments

pfam_file

The path of meme file or mast file.

the_order

The path of order file. A List of Gene ID , One ID Per Line.

domain_select

The domain ID which you want to align with.

shape

RoundRect or Rect.

r

The radius of rounded corners.

legend_size

The size of legend.

domain_color

The color set of domain.

Author

Shiqi Zhao

Examples

pfam_path <- system.file("extdata", "iprscan.tsv", package = "BioVizSeq")
order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
pfam_plot(pfam_path)
pfam_plot(pfam_path, the_order=order_path)