BioVizSeq (version 1.0.3)

pfam_to_loc: pfam_to_loc

Description

Extract the location information of domain from pfam result

Usage

pfam_to_loc(pfam_data)

Value

list

Arguments

pfam_data

The result file (.tsv) of pfam (via InterPro).

Author

Shiqi Zhao

Examples

pfam_path <- system.file("extdata", "iprscan.tsv", package = "BioVizSeq")
pfam_file <- read.table(pfam_path, sep='\t', header = FALSE)
motif_loc <- pfam_to_loc(pfam_file)