plantcare_plot

Visualization of cis-element in plantcare result file

Visualizing the types and distribution of elements within
bio-sequences. At the same time, We have developed a geom layer,
geom_rrect(), that can generate rounded rectangles. No external references
are used in the development of this package.

Shiqi Zhao

BioVizSeq

Visualizing the Elements Within Bio-Sequences

plantcare_plot function

<dl><dt>plantcare_file</dt>
<dd>The path of plantcare result file (.tab).</dd>
<dt>promoter_length</dt>
<dd>The promoter length.</dd>
<dt>the_order</dt>
<dd>The path of order file. A List of Gene ID , One ID Per Line.</dd>
<dt>shape</dt>
<dd>RoundRect or Rect.</dd>
<dt>r</dt>
<dd>The radius of rounded corners.</dd>
<dt>legend_size</dt>
<dd>The size of legend.</dd>
<dt>element_color</dt>
<dd>The color set of cis-element.</dd></dl>

Arguments

Author

plantcare_plot — plantcare_plot

<dl>

<dt>plantcare_file</dt>
<dd>The path of plantcare result file (.tab).</dd>


<dt>promoter_length</dt>
<dd>The promoter length.</dd>


<dt>the_order</dt>
<dd>The path of order file. A List of Gene ID , One ID Per Line.</dd>


<dt>shape</dt>
<dd>RoundRect or Rect.</dd>


<dt>r</dt>
<dd>The radius of rounded corners.</dd>


<dt>legend_size</dt>
<dd>The size of legend.</dd>


<dt>element_color</dt>
<dd>The color set of cis-element.</dd>

</dl>

plantcare_plot: plantcare_plot

Description

Usage

Value

Arguments

Author

Examples