smart_plot

Visualization of domain in SMART result file

Visualizing the types and distribution of elements within
bio-sequences. At the same time, We have developed a geom layer,
geom_rrect(), that can generate rounded rectangles. No external references
are used in the development of this package.

Shiqi Zhao

BioVizSeq

Visualizing the Elements Within Bio-Sequences

smart_plot function

<dl><dt>fasta_file</dt>
<dd>The path of protein fasta file.</dd>
<dt>the_order</dt>
<dd>The path of order file. A List of Gene ID , One ID Per Line.</dd>
<dt>domain_select</dt>
<dd>The domain ID which you want to align with.</dd>
<dt>shape</dt>
<dd>RoundRect or Rect.</dd>
<dt>r</dt>
<dd>The radius of rounded corners.</dd>
<dt>legend_size</dt>
<dd>The size of legend.</dd>
<dt>domain_color</dt>
<dd>The color set of domain.</dd></dl>

Arguments

Author

smart_plot — smart_plot

<dl>

<dt>fasta_file</dt>
<dd>The path of protein fasta file.</dd>


<dt>the_order</dt>
<dd>The path of order file. A List of Gene ID , One ID Per Line.</dd>


<dt>domain_select</dt>
<dd>The domain ID which you want to align with.</dd>


<dt>shape</dt>
<dd>RoundRect or Rect.</dd>


<dt>r</dt>
<dd>The radius of rounded corners.</dd>


<dt>legend_size</dt>
<dd>The size of legend.</dd>


<dt>domain_color</dt>
<dd>The color set of domain.</dd>

</dl>

smart_plot: smart_plot

Description

Usage

Value

Arguments

Author