reporter

Example data.frame representing reporter information

The reporter object is a 500 by 1 data frame. The rows represent the 500 probe IDs in the geneData data. The values in reporter are the predefined probe types for the probes. reporter is used in conjunction with the geneData object and its associates.

Keywords
datasets
Usage
data(reporter)
Details

There are 10 predefined probe types:

  • AFFX- Quality Control (QC)
  • _f_ SequenceFamily
  • _g_ CommonGroups
  • _s_ SimilarityConstraint
  • _r_ RulesDropped
  • _i_ Incomplete
  • _b_ AmbiguousProbeSet
  • _l_ LongProbeSet
  • _at AntiSenseTarget
  • _st SenseTarget

Format

A 500 by 1 data frame

Source

Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals (http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf)

Aliases
  • data:reporter
  • reporter
Examples
data(reporter)
## maybe str(reporter) ; plot(reporter) ...
Documentation reproduced from package Biobase, version 2.26.0, License: Artistic-2.0

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