AssayData-class |
Class "AssayData" |
Versions |
Class "Versions" |
VersionsNull |
Class "VersionsNull" |
esApply |
An apply-like function for ExpressionSet and related structures.
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listLen |
Lengths of list elements |
exprs |
Retrieve expression data from eSets. |
makeDataPackage |
Make an R package from a data object |
class:characterORMIAME |
Class to Make Older Versions Compatible |
abstract |
Retrieve Meta-data from eSets and ExpressionSets. |
addVigs2WinMenu |
Add Menu Items to an Existing/New Menu of Window |
ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays.
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MIAME |
Class for Storing Microarray Experiment Information
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NChannelSet-class |
Class to contain data from multiple channel array technologies |
createPackage |
Create a Package Directory from a Template |
data:aaMap |
Dataset: Names and Characteristics of Amino Acids |
SnpSet |
Class to Contain Objects Describing High-Throughput SNP Assays.
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isVersioned |
Determine whether object or class contains versioning information |
selectSome |
Extract elements of a vector for concise rendering |
lcSuffix |
Compute the longest common prefix or suffix of a string |
selectChannels |
Create a new NChannelSet instance by selecting specific channels |
protocolData |
Protocol Metadata |
read.AnnotatedDataFrame |
Read and write 'AnnotatedDataFrame' |
validMsg |
Conditionally append result to validity message |
assayData |
Retrieve assay data from eSets and ExpressionSets. |
anyMissing |
Checks if there are any missing values in an object or not |
container |
A Lockable List Structure with Constraints on Content |
cache |
Evaluate an expression if its value is not already cached. |
Biobase-package |
Biobase Package Overview |
eSet |
Class to Contain High-Throughput Assays and Experimental Metadata
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MultiSet |
Class to Contain and Describe High-Throughput Expression Level Assays.
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MIAxE |
MIAxE objects |
classVersion |
Retrieve information about versioned classes |
contents |
Function to retrieve contents of environments |
VersionedBiobase |
Class "VersionedBiobase" |
Versioned |
Class "Versioned" |
data:geneData |
Sample expression matrix and phenotype data.frames. |
reporter |
Example data.frame representing reporter information |
featureNames |
Retrieve feature and sample names from eSets. |
featureData |
Retrieve information on features recorded in eSet-derived
classes. |
data:sample.ExpressionSet |
Dataset of class 'ExpressionSet' |
data:sample.MultiSet |
Data set of class 'MultiSet' |
openVignette |
Open a Vignette or Show Vignette Selection Menu |
openPDF |
Open PDF Files in a Standard Viewer |
read.MIAME |
Read MIAME Information into an Instance of Class 'MIAME'
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readExpressionSet |
Read 'ExpressionSet' |
strbreak |
Break Character Strings to Fit Width |
subListExtract |
Extract the same element from the sublists of a list |
phenoData |
Retrieve information on experimental phenotypes recorded in
eSet and ExpressionSet-derived classes. |
package.version |
Report Version of a Package |
updateObjectTo |
Update an object to the class definition of a template |
testBioCConnection |
A function to check internet connectivity to Bioconductor |
Aggregate |
A Simple Aggregation Mechanism. |
annotatedDataFrameFrom-methods |
Methods for Function annotatedDataFrameFrom in Package `Biobase' |
aggregator |
A Simple Class for Aggregators |
AnnotatedDataFrame |
Class Containing Measured Variables and Their Meta-Data Description.
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dims |
Retrieve dimensions of all elements in a list or environment |
dumpPackTxt |
Dump Textual Description of a Package |
isCurrent |
Use version information to test whether class is current |
matchpt |
Nearest neighbor search. |
multiassign |
Assign Values to a Names |
reverseSplit |
A function to reverse the role of names and values in a list. |
isUnique |
Determine Unique Elements |
rowMedians |
Calculates the median for each row in a matrix |
updateOldESet |
Update previously created eSet object to current eSet structure |
userQuery |
A function to query the user for input |
channel |
Create a new ExpressionSet instance by selecting a specific channel |
channelNames |
Retrieve and set channel names from object |
copyEnv |
List-Environment interactions |
copySubstitute |
Copy Between Connections or Files with Configure-Like Name-Value Substitution |
Deprecated and Defunct |
Biobase Deprecated and Defunct |
description |
Retrieve and set overall experimental information eSet-like classes. |
getPkgVigs |
List Vignette Files for a Package |
Internals |
Internals |
note |
Informational Messages |
notes |
Retrieve and set eSet notes. |
rowQ |
A function to compute empirical row quantiles. |
ScalarObject-class |
Utility classes for length one (scalar) objects |
snpCall |
Get and retrieve SNP call and call probability data. |
storageMode |
Retrieve or set storage mode for eSets. |
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