MIAMEcovers MIAME entries that are not covered by other classes in Bioconductor. Namely, experimental design, samples, hybridizations, normalization controls, and pre-processing information. The
MIAMEclass is derived from
charactercontaining the experimenter name
charactercontaining the laboratory where the experiment was conducted
charactercontaining contact information for lab and/or experimenter
charactercontaining a single-sentence experiment title
charactercontaining an abstract describing the experiment
charactercontaining a URL for the experiment
listcontaining information about the samples
listcontaining information about the hybridizations
listcontaining information about the controls such as house keeping genes
listcontaining information about the pre-processing steps used on the raw data from this experiment
characterlisting strings of PubMed identifiers of papers relevant to the dataset
listcontaining other information for which none of the above slots does not applies
MIAME(name = "", lab = "", contact = "", title = "", abstract = "", url = "", pubMedIds = "" , samples = "", hybridizations = list(), normControls = list(), preprocessing = list(), other = list()): Creates a new
MIAMEobject with slots as defined above.
MIAME-class, issuing warnings when ambiguities encountered.
notes(MIAME), notes(MIAME) <- value:
notes(MIAME) <- characterappends character to notes; use
notes(MIAME) <- listto replace the notes entirely.
pubMedIds(MIAME), pubMedIds(MIAME) <- value:
updateObject(object, ..., verbose=FALSE)