BiocCaseStudies v1.34.0

by Bioconductor Package Maintainer

BiocCaseStudies: Support for the Case Studies Monograph

Software and data to support the case studies.

Functions in BiocCaseStudies

Name	Description
requiredPackages	check for missing and outdated packages
mySessionInfo	Wrapper around sessionInfo
parseLibVers	Parse the library versions
markup	Markup commands.
fixedWidthCat	Control the output of show methods
resample	Resample from ALL ExpressionSet and plot
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Details

License	Artistic-2.0
LazyLoad	true
Collate	init.R requiredLibs.R resample.R mySessionInfo.R colors.R fixedWidthCat.R
biocViews	Infrastructure

suggests	affy (>= 1.17.3) , affyPLM (>= 1.15.1) , affyQCReport (>= 1.17.0) , ALL (>= 1.4.3) , annaffy (>= 1.11.1) , annotate (>= 1.17.3) , AnnotationDbi (>= 1.1.6) , apComplex (>= 2.5.0) , biocGraph (>= 1.1.1) , bioDist (>= 1.11.3) , biomaRt (>= 1.13.5) , Category (>= 2.5.0) , CCl4 (>= 1.0.6) , class (>= 7.2-38) , CLL (>= 1.2.4) , cluster (>= 1.11.9) , convert (>= 1.15.0) , gcrma (>= 2.11.1) , genefilter (>= 1.17.6) , geneplotter (>= 1.17.2) , GO , GO.db (>= 2.0.2) , GOstats (>= 2.5.0) , graph (>= 1.17.4) , GSEABase (>= 1.1.13) , hgu133a , hgu133a.db (>= 2.0.2) , hgu95av2 , hgu95av2.db , hgu95av2cdf (>= 2.0.0) , hgu95av2probe (>= 2.0.0) , hopach (>= 1.13.0) , KEGG , KEGG.db (>= 2.0.2) , kohonen (>= 2.0.2) , lattice (>= 0.17.2) , latticeExtra (>= 0.3-1) , limma (>= 2.13.1) , MASS (>= 7.2-38) , MLInterfaces (>= 1.13.17) , multtest (>= 1.19.0) , org , org.Hs.eg.db (>= 2.0.2) , ppiStats (>= 1.5.4) , randomForest (>= 4.5-20) , RBGL (>= 1.15.6) , RColorBrewer (>= 1.0-2) , Rgraphviz (>= 1.17.11) , vsn (>= 3.4.0) , weaver (>= 1.5.0) , xtable (>= 1.5-2) , yeastExpData (>= 0.9.11)
depends	Biobase , methods , tools , utils
Contributors	R. Gentleman, W. Huber, F. Hahne, M. Morgan, S. Falcon

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