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BiocContributions (version 0.99.70)

Convenience functions for adding packages to the svn repository

Description

A set of tools for cleaning up, post-processing, adding packages to the repository, and for emailing people etc.

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Version

Version

0.99.70

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in BiocContributions (0.99.70)

add_data_experiment_permisions

Helper function to Add Data Experiment Permissions
add_packages

Add packages to SVN
bioc_views_classification

Extract and validiate biocViews terms from tarball
as.issue

Coerce to an issue object
clean_data_package

Clean and copy a Data Experiment package
read_permissions

Read authz permission file
write_permissions

Write authz permission file
devteam

Members of the devteam
users

Retrieve the user list
assign_new_packages

Assign new packages
tracker_login

Login to the issue tracker
tabulate_activity

Tabulate tracker activity
issue

Retrieve all of the messages from an issue
post

Post a message to an issue
clean

Convenience functions for managing behind the scenes operations involved in adding packages to Bioconductor Repositories.
request_credentials

Request new credentials for users
svn

Declare an SVN instance
svn_auth_text

Generate text to copy / paste into svn file Bioconductor.authz
standard_commit_message

Generate a standard commit message for permission edits
accept_package

Accept a package on the tracker
maintainers

Retrieve the maintainers from a tarball
emailMaintainer

Email a new user their credentials
add_software_permisions

Helper function to Add Software Permissions
user_db

Retrieve the remote user database
match_user

See if a person already exists in the user db
proj_path

Path to file (in the unix sense) within the project
edit_software_permissions

Edit the software permissions
email

Extract the email from an object
package_name

Extract a packages name from a tarball
tracker_search

Query the issue tracker
the

storage object
workflow_standard

Workflow steps
assign_packages

Assign a specific package
download

Download attachments from an issue
status_map

Status code to name mapping
package_assignment_email

Generate the package assignments email given code to run
edit_data_experiment_permissions

Edit the data experiment permissions
run_commands

Run commands on a file, possibly remote.
add_to_spreadsheet

Add packages to the tracking worksheet