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BiocContributions (version 0.99.70)
Convenience functions for adding packages to the svn repository
Description
A set of tools for cleaning up, post-processing, adding packages to the repository, and for emailing people etc.
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Version
Version
0.99.70
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Version
0.99.70
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in BiocContributions (0.99.70)
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add_data_experiment_permisions
Helper function to Add Data Experiment Permissions
add_packages
Add packages to SVN
bioc_views_classification
Extract and validiate biocViews terms from tarball
as.issue
Coerce to an issue object
clean_data_package
Clean and copy a Data Experiment package
read_permissions
Read authz permission file
write_permissions
Write authz permission file
devteam
Members of the devteam
users
Retrieve the user list
assign_new_packages
Assign new packages
tracker_login
Login to the issue tracker
tabulate_activity
Tabulate tracker activity
issue
Retrieve all of the messages from an issue
post
Post a message to an issue
clean
Convenience functions for managing behind the scenes operations involved in adding packages to Bioconductor Repositories.
request_credentials
Request new credentials for users
svn
Declare an SVN instance
svn_auth_text
Generate text to copy / paste into svn file Bioconductor.authz
standard_commit_message
Generate a standard commit message for permission edits
accept_package
Accept a package on the tracker
maintainers
Retrieve the maintainers from a tarball
emailMaintainer
Email a new user their credentials
add_software_permisions
Helper function to Add Software Permissions
user_db
Retrieve the remote user database
match_user
See if a person already exists in the user db
proj_path
Path to file (in the unix sense) within the project
edit_software_permissions
Edit the software permissions
email
Extract the email from an object
package_name
Extract a packages name from a tarball
tracker_search
Query the issue tracker
the
storage object
workflow_standard
Workflow steps
assign_packages
Assign a specific package
download
Download attachments from an issue
status_map
Status code to name mapping
package_assignment_email
Generate the package assignments email given code to run
edit_data_experiment_permissions
Edit the data experiment permissions
run_commands
Run commands on a file, possibly remote.
add_to_spreadsheet
Add packages to the tracking worksheet