html_document(toc = TRUE, toc_depth = 3, number_sections = TRUE, fig_width = 7, fig_height = 5, fig_retina = NULL, fig_caption = FALSE, dev = "png", smart = TRUE, self_contained = TRUE, highlight = "default", mathjax = "default", css = NULL, includes = NULL, keep_md = FALSE, lib_dir = NULL, md_extensions = NULL, pandoc_args = NULL, ...)
TRUE
to include a table of contents in the outputTRUE
to number section headingsTRUE
to render figures with captionsNULL
to prevent syntax
highlighting.NULL
to exclude MathJax entirely.includes
function)._files
appended to it.rmarkdown_format
for additional details.render
BiocStyle::html_document
format is based on the html_document
format.
See the online
documentation for additional details on using the html_document
format.R Markdown documents can have optional metadata that is used to generate a
document header that includes the title, author, date, package info and abstract. For more details
see the documentation on R Markdown metadata
.
R Markdown documents also support citations. You can find more information on the markdown syntax for citations in the Bibliographies and Citations article in the online documentation.
pdf_document
, md_document
## Not run:
#
# # simple invocation
# render("input.Rmd", BiocStyle::html_document())
#
# # specify options
# render("input.Rmd", BiocStyle::html_document(toc = FALSE))
# ## End(Not run)
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