GetNumGenesWeighted

Numeric Matrix. A sample by gene expression matrix containing the
marker genes.

Numeric Vector. The weights of the genes that correspond to the
columns of x.

Numeric. Minimum number of genes to consider as markers.

min.gene

Numeric. Maximum number of genes to consider as markers.

max.gene

Get number of genes to use with weighted PCA

Provides tools to accurately estimate cell type abundances
from heterogeneous bulk expression. A reference-based method utilizes
single-cell information to generate a signature matrix and transformation
of bulk expression for accurate regression based estimates. A marker-based
method utilizes known cell-specific marker genes to measure relative
abundances across samples.
For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.

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GetNumGenesWeighted: Get number of genes to use with weighted PCA

Description

Usage

Arguments

Value