GetOverlappingGenes

Expression Set with single-cell data

sc.eset

bulk.eset

Character vector. List of relevant marker genes

markers

verbose

Find overlapping genes in single-cell data, bulk data, and marker genes

Provides tools to accurately estimate cell type abundances
from heterogeneous bulk expression. A reference-based method utilizes
single-cell information to generate a signature matrix and transformation
of bulk expression for accurate regression based estimates. A marker-based
method utilizes known cell-specific marker genes to measure relative
abundances across samples.
For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.

GetOverlappingGenes: Find overlapping genes in single-cell data, bulk data, and marker genes

Description

Usage

Arguments

Value