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BoSSA (version 3.3)

A Bunch of Structure and Sequence Analysis

Description

Reads and plots phylogenetic placements.

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Version

Install

install.packages('BoSSA')

Monthly Downloads

362

Version

3.3

License

GPL

Maintainer

pierre lefeuvre

Last Published

May 9th, 2018

Functions in BoSSA (3.3)

BoSSA-package

BoSSA
read_jplace

Read a jplace file
print.protdb

Compact display of protdb object
pplace

A placement object as obtained with the read_sqlite function
pplace_to_matrix

Pplace to contingency matrix
write_jplace

Write a jplace or pplace object to the disk
sub_pplace

Subsets a pplace object
refpkg

Summary data and plots for reference packages
pplace_to_table

Merge the multiclass and the placement table of pplace object
print.pplace

Compact display of pplace and jplace objects
plot.pplace

Plot a pplace or jplace object
read_protdb

Read Protein Data Bank (PDB) file
read_sqlite

Read a pplacer/guppy sqlite file
pplace_to_taxonomy

Convert a pplace object to a taxonomy table