Learn R Programming

BreedingSchemeLanguage (version 0.9.6)

predictValue: Genomic prediction

Description

Genomic prediction

Usage

predictValue(sEnv = NULL, popID = NULL, trainingPopID = NULL,
  locations = NULL, years = NULL, sharingInfo = NULL)

Arguments

sEnv

the environment that BSL functions operate in. If NULL, the default simEnv is attempted

popID

population ID to be predicted (default: the latest population)

trainingPopID

population ID to be used for training a prediction model (default: all populations with phenotype data). NOTE: if sharingInfo="none" this parameter has no effect.

locations

data from which locations should be used (default: all locations)

years

data from which years should be used (default: all years)

sharingInfo

one of "none", "markers", "pedigree". If none, genotypic values are assumed IID. If markers or pedigree, a genomic or pedigree relationship matrix is constructed

Value

modifies the list sims in environment sEnv by calculating predicted values as specified and changing the default selection criterion to use them