RDocumentation
Moon
Learn R
Search all packages and functions
BridgeDbR (version 1.6.0)
Code for using BridgeDb identifier mapping framework from within R
Description
Use BridgeDb functions and load identifier mapping databases in R
Copy Link
Copy
Link to current version
Version
Version
1.6.0
1.4.0
1.2.0
1.0.0
Down Chevron
Version
1.6.0
License
AGPL-3
Issues
42
Pull Requests
3
Stars
26
Forks
21
Repository
https://github.com/bridgedb/BridgeDb
Homepage
https://github.com/BiGCAT-UM/bridgedb-r
Maintainer
Anwesha Bohler
Last Published
March 16th, 2014
Functions in BridgeDbR (1.6.0)
Search functions
BridgeDbR-package
BridgeDBR Package.
getSystemCode
Return the system code of a particular data source.
getMatchingSources
Return a list of data sources of which the identifier pattern matches the identifier given.
getBridgeNames
Method to list the BridgeDb identifier mapping file names as available from the download site.
getDatabase
Downloads a identifier mapping database for the given organism.
getDataSource
Return a DataSource object based on either a name or system code.
map
Converts one identifier into other identifiers for the given target data source.
loadDatabase
Loads a BridgeDb identifier mapping database (.bridge file) as an IDMapper object.
getFullName
Return the name of a particular data source.
getOrganismCode
Return the code of a particular organism.