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BridgeDbR (version 1.6.0)

Code for using BridgeDb identifier mapping framework from within R

Description

Use BridgeDb functions and load identifier mapping databases in R

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Version

Version

1.6.0

License

AGPL-3

Issues

32

Pull Requests

3

Stars

33

Forks

21

Maintainer

Anwesha Bohler

Last Published

February 15th, 2017

Functions in BridgeDbR (1.6.0)

BridgeDbR-package

BridgeDBR Package.
getSystemCode

Return the system code of a particular data source.
getMatchingSources

Return a list of data sources of which the identifier pattern matches the identifier given.
getBridgeNames

Method to list the BridgeDb identifier mapping file names as available from the download site.
getDatabase

Downloads a identifier mapping database for the given organism.
getDataSource

Return a DataSource object based on either a name or system code.
map

Converts one identifier into other identifiers for the given target data source.
loadDatabase

Loads a BridgeDb identifier mapping database (.bridge file) as an IDMapper object.
getFullName

Return the name of a particular data source.
getOrganismCode

Return the code of a particular organism.