jg.convertPeakset

<p>is the name of the DiffBind object to convert</p>

jg.controlPeakset

<p>Converts a DiffBind object into a DESeq2 compatible form for the workflow.</p>

convert

DESeq2

Diffbind

Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) <doi:10.1101/182261>.

jg.convertPeakset: jg.convertPeakset

Description

Usage

Arguments

Examples