jg.countAlignedMReads

jg.bamFiles

<p>This function counts the number of aligned reads in millions from a list of
bam files. It returns these in as a list of numbers in the same order.</p>

bamFiles

reads

Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) <doi:10.1101/182261>.

jg.countAlignedMReads: jg.countAlignedMReads

Description

Usage

Arguments