Brundle (version 1.0.9)

jg.getNormalizationCoefficient: jg.getNormalizationCoefficient

Description

This function allows the user to caryy out the normalisation and returns a coefficient by using a linear fit to the control data.

Usage

jg.getNormalizationCoefficient(jg.controlCountsTreated,
  jg.controlCountsUntreated)

Arguments

jg.controlCountsTreated

Control counts extracted from the Diffbind object for the treated condition using jg.getControlCounts

jg.controlCountsUntreated

Control ounts extracted from the Diffbind object for the untreated condition using jg.getControlCounts

Examples

# NOT RUN {
data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.coefficient<-jg.getNormalizationCoefficient(jg.controlCountsTreated,
                                                  jg.controlCountsUntreated)
# }