jg.getSampleIds

<p>is the filename of the samplesheet</p>

jg.controlSampleSheet

<p>Extracts the sample Id from DiffBind formatted SampleSheet in csv format.</p>

sample

Diffbind

samplesheet

Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) <doi:10.1101/182261>.

jg.getSampleIds: jg.getSampleIds

Description

Usage

Arguments