Brundle (version 1.0.9)

jg.plotDeSeqCombined: jg.plotDeSeqCombined

Description

Overlays the plots from the output from DESeq2 for the Brundle pipeline

Usage

jg.plotDeSeqCombined(jg.controlResultsDeseq, jg.experimentResultsDeseq,
  title.main, padjX, flip = FALSE)

Arguments

jg.controlResultsDeseq

is the result Dataframe from DESeq2 for the control conditions

jg.experimentResultsDeseq

is the result Dataframe from DESeq2 for the experimental conditions

title.main

is the plot title

padjX

is the minimum FDR to highlight as significant

flip

when set to TRUE flips the data

Examples

# NOT RUN {
data(jg.controlResultsDeseq,package="Brundle")
data(jg.experimentResultsDeseq,package="Brundle")

jg.plotDeSeqCombined(as.data.frame(jg.controlResultsDeseq),
                    as.data.frame(jg.experimentResultsDeseq),
                    title.main="ER and CTCF Binding Folding changes on ER treatment",
                    p=0.01,flip=TRUE)

# }