Brundle (version 1.0.9)

jg.plotNormalization: jg.plotNormalization

Description

This function allows the user to visualize the normalisation. It is not needed for the pipeline but provides a helpful illustration of the process.

Usage

jg.plotNormalization(jg.controlCountsTreated, jg.controlCountsUntreated)

Arguments

jg.controlCountsTreated

Control counts extracted from the Diffbind object for the treated condition using jg.getControlCounts

jg.controlCountsUntreated

Control ounts extracted from the Diffbind object for the untreated condition using jg.getControlCounts

Examples

# NOT RUN {
data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.plotNormalization(jg.controlCountsTreated, jg.controlCountsUntreated)
# }